Flaveria bidentis 3 - SRA

SRX467615: Flaveria bidentis 3
1 ILLUMINA (Illumina HiSeq 2000) run: 55.8M spots, 5.6G bases, 3.4Gb downloads

Design: F. pringlei, F. robusta, F. chloraefolia, F. pubescens, F. anomala, F. ramosissima, F. brownii, F. bidentis and F. trinervia plants were grown in the green house at University of Duesseldorf side-by-side and harvested at four different points of time over the year. Total RNA was isolated from the second and fourth visible leaves according to followed by a DNase treatment. 1µg of total RNA was used for cDNA library generation, which was accomplished with the TruSeq™ RNA Sample Preparation Kit (Illumina Inc., San Diego, USA) via the Low-Throughput Protocol (TruSeq™ RNA Sample Preparation Guide, Illumina Proprietary Catalog # RS-930-2001, Part # 15008136 Rev. A, November 2010). Clusters were generated with the TruSeq SR Cluster Kit v2 according to the Reagent Preparation Guide with the Illumina cBot device. The single read sequencing was performed with the Illumina HiSeq2000.

Submitted by: HEIRICH-HEINE-UNIVERSITY DÜSSELDORF

Study: Flaveria bidentis Transcriptome or Gene expression

PRJNA237707 • SRP036880 • All experiments • All runs

show Abstracthide Abstract

C4 plants evolved several times independently from C3 ancestors. To gain insight into the extent to which gene expression is altered during the C3 to C4 transition we have analyzed the leaf transcriptomes of closely related Flaveria species exhibiting a C4, C3 or C3-C4 intermediate type of photosynthesis.

Sample: Plant sample for Flaveria bidentis

SAMN02639424 • SRS555199 • All experiments • All runs

Organism: Flaveria bidentis

Library:

Name: Fbi3

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: PolyA

Layout: SINGLE

Spot descriptor:

1 forward

Pipeline: show...hide...

Program	Version
CASAVA	1.8.1

Runs: 1 run, 55.8M spots, 5.6G bases, 3.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR1165186	55,755,875	5.6G	3.4Gb	2014-09-08

ID:: 647803

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